x: 数值向量,表示每个扇形的面积
labels: 字符型向量,表示各扇形面积标签
edges: 多边形的边数(圆的轮廓类似很多边的多边形)
radius: 饼图半径
main: 饼图标题
clockwise: 逻辑值,用来指示饼图各个切片是否按顺时针做出分割
angle: 设置底纹的斜率
density: 底纹的密度,默认值为 NULL
col: 是表示每个扇形的颜色,相当于调色板
[1] Robert I. Kabacoff (著). R语言实战(高涛/肖楠/陈钢 译). 北京: 人民邮电出版社.
[2] https://www.runoob.com/r/r-pie-charts.html
[3] https://zhuanlan.zhihu.com/p/80415566
使用polygon进行纯色填充。其中density为填充的阴影线的密度,angle为阴影线的斜率。值得注意的是,当你需要纯色填充时,density和angle可以忽略不写。然后border为边框的颜色。同时border也可以是逻辑。即FALSE相当于NULL,TRUE相当于为前景色。1. R语言自带函数cor(data, method=" ")可以快速计算出相关系数 ,数据类型:data.frame
如data.frame为:zz, 绘图如下:
a. single protein:线性回归画法
1. ggplot(zz,aes(x=a, y=HDL))+
geom_point(alpha=1,colour="#FFA54F")+
geom_smooth(method = lm,colour="#8B658B")+
#scale_color_brewer(palette = "Set1")+
theme_bw()+
labs(x="Ferritin",y="HDL.C",title="Pearson’s correlation test of ferritin and HDL.C")+
annotate("text", x = 1000, y = 2.5, label = "r = -0.51",colour="black",size=4)
2. library(ggstatsplot)
ggscatterstats(data = alldata,
y = TRANSFUSION.UNIT,
x = NPTXR,
centrality.para = "mean", #"mean" or "median"
margins = "both",
xfill = "#D8BFD8",
yfill = "#EEDD82",
#line.size= ,
line.color="#8B6969",
point.color="#2F4F4F",
marginal.size=4,
marginal.type = "density", # "histogram", "boxplot", "density", "violin", "densigram")
title = "Relationship between TRANSFUSION.UNIT and NPTXR")
b. ggcorrplot, 全部蛋白 global correlation map 画法
ggcorrplot(cor(alldata))
2. summary(lm(y~x),method=" ") %>%.[["coefficients"]] 正规线性回归
(其实就是:a<-lm(y~x1+x2+...,data)
plot(summary(lm(y~x),method=" ")) #绘图
3. ggcor部分数据绘图: 数据类型为data.frame,纵坐标为各指标or各蛋白,行为观测值。
data <- fortify_cor(alldata[,10:11],alldata,cluster.type = "col")
ggcor<-ggcor(data,label_size=0.5) +
geom_colour()+
theme(axis.text.x = element_text(colour = "black",size = 4.7),
axis.text.y=element_text(size=5.5),
axis.ticks=element_blank())+
geom_num(aes(num=r),colour="black",size=1.5)
4. corrr包画法
datasets::mtcars %>%
correlate() %>%
focus(-cyl, -vs, mirror = TRUE) %>%
rearrange() %>%
network_plot(min_cor = .2)